Dr. Sophie Chiron Profile

Dr. Sophie Chiron

at Vanderbilt Univ. Medical Ctr.

SPIE Involvement:

Author

Publications (5)

Proceedings Article | 7 April 2023 Presentation

Influence of cell-type ratio on spatially resolved single-cell transcriptomes using the Tangram algorithm: based on implementation on single-cell and MxIF data

Can Cui, Shunxing Bao, Jia Li, Ruining Deng, Lucas Remedios, Zuhayr Asad, Sophie Chiron, Ken Lau, Yaohong Wang, Lori Coburn, Keith Wilson, Joseph T. Roland, Bennett Landman, Qi Liu, Yuankai Huo

Proceedings Volume 12471, 124710A (2023) https://doi.org/10.1117/12.2654135

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Proceedings Article | 7 April 2023 Presentation + Paper

Topological-preserving membrane skeleton segmentation in multiplex immunofluorescence imaging

Shunxing Bao, Can Cui, Jia Li, Yucheng Tang, Ho Hin Lee, Ruining Deng, Lucas Remedios, Xin Yu, Qi Yang, Sophie Chiron, Nathan Heath Patterson, Ken Lau, Qi Liu, Joseph Roland, Lori Coburn, Keith Wilson, Bennett Landman, Yuankai Huo

Proceedings Volume 12471, 124710B (2023) https://doi.org/10.1117/12.2654087

KEYWORDS: Image segmentation, Deep learning, Education and training, Tissues, Biological imaging, RGB color model, Medicine, Image enhancement, Diseases and disorders, Cross validation

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Proceedings Article | 7 April 2023 Presentation + Paper

Predicting Crohn’s disease severity in the colon using mixed cell nucleus density from pseudo labels

Lucas Remedios, Shunxing Bao, Cailey Kerley, Leon Cai, François Rheault, Ruining Deng, Can Cui, Sophie Chiron, Ken Lau, Joseph Roland, Mary Washington, Lori Coburn, Keith Wilson, Yuankai Huo, Bennett Landman

Proceedings Volume 12471, 1247116 (2023) https://doi.org/10.1117/12.2653918

KEYWORDS: Diseases and disorders, Cross validation, Tissues, Image segmentation, Biopsy, Histograms, Colon, Binary data

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Proceedings Article | 4 April 2022 Presentation + Paper

Inpainting missing tissue in multiplexed immunofluorescence imaging

Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Qi Yang, Xin Yu, Sophie Chiron, Lori Coburn, Keith Wilson, Joseph Roland, Bennett Landman, Yuankai Huo

Proceedings Volume 12039, 120390K (2022) https://doi.org/10.1117/12.2611827

KEYWORDS: Tissues, Image segmentation, Gallium nitride, Biopsy, Multiplexing, Medical imaging, Medicine, Surgery, Shape memory alloys, Process modeling

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Proceedings Article | 15 February 2021 Presentation + Paper

A cross-platform informatics system for the Gut Cell Atlas: integrating clinical, anatomical and histological data

Shunxing Bao, Sophie Chiron, Yucheng Tang, Cody Heiser, Austin Southard-Smith, Ho Hin Lee, Marisol Ramirez, Yuankai Huo, Mary Washington, Elizabeth Scoville, Joseph Roland, Qi Liu, Ken Lau, Keith Wilson, Lori Coburn, Bennett Landman

Proceedings Volume 11601, 1160106 (2021) https://doi.org/10.1117/12.2581074

KEYWORDS: Information science, Tissues, System integration, Profiling, Electronic health records, Data storage, Biopsy, Analytical research

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