Gas chromatography (GC) is a staple analytical technique used to separate chemical mixtures (analytes) prior to identification with a hyphenated technique, such as mass spectrometry or Fourier transform infrared (IR) spectroscopy. Traditionally, analytes elute through the GC separation column where they are detected when they exit. We have developed a technique to perform in situ IR spectroscopy during the process of separating the analytes along the GC column. This is achieved by spin coating the stationary phase onto a germanium prism and actively probing the stationary phase in an attenuated total reflectance configuration with a quantum cascade laser.. The GC column is formed by pressing a molded epoxy lid, with grooves that form the tubular column, onto the stationary phase coated prism.