Paper
3 April 2024 Segmentation of human olfactory bulb glomeruli on its phase-contrast tomographic images with neural networks
Aleksandr Smolin, Marina Chukalina, Inna Bukreeva, Olga Junemann, Alessia Cedola, Michela Fratini, Sergei Saveliev, Andrey Yamaev
Author Affiliations +
Proceedings Volume 13072, Sixteenth International Conference on Machine Vision (ICMV 2023); 1307209 (2024) https://doi.org/10.1117/12.3023398
Event: Sixteenth International Conference on Machine Vision (ICMV 2023), 2023, Yerevan, Armenia
Abstract
The human olfactory bulb (OB), an important part of the brain responsible for the sense of smell, is a complex structure composed of multiple layers and cell types. Studying the OB morphological structure is essential for understanding the decline in olfactory function related to aging, neurodegenerative disorders, and other pathologies. Traditional microscopy methods in which slices are stained with solutions to contrast individual elements of the morphological structure are destructive. Non-destructive high-resolution technique is the X-ray phase-contrast tomography. However, manual segmentation of the reconstructed images are time-consuming due to large amount of data and prone to errors. U-Net-based model to optimize the segmentation of OB morphological structures, focusing specifically on glomeruli, in tomographic images of the human OB is proposed. The strategy to address overfitting and enhance the model's accuracy is described. This method addresses the challenges posed by complex limited data containing abundant details, similar grayscale levels between soft tissues, and blurry image details. Additionally, it successfully overcomes the limitations of a small dataset containing images with extremely dense point clouds, preventing the models from overfitting.
© (2024) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.
Aleksandr Smolin, Marina Chukalina, Inna Bukreeva, Olga Junemann, Alessia Cedola, Michela Fratini, Sergei Saveliev, and Andrey Yamaev "Segmentation of human olfactory bulb glomeruli on its phase-contrast tomographic images with neural networks", Proc. SPIE 13072, Sixteenth International Conference on Machine Vision (ICMV 2023), 1307209 (3 April 2024); https://doi.org/10.1117/12.3023398
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KEYWORDS
Education and training

Data modeling

Interpolation

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