Paper
17 March 2023 Digitization of print-based absorption and fluorescence spectra – extracting clarity from clutter
Masahiko Taniguchi, Zhiyuan Wu, Caitlin D. Sterling, Jonathan S. Lindsey
Author Affiliations +
Abstract
Absorption and fluorescence spectra are central to the photosciences. The PhotochemCAD initiative, aimed at assembling digital databases of absorption and fluorescence spectra for use across the photosciences, now comprises <1000 absorption spectra and <500 fluorescence spectra for ~1000 compounds along with companion photophysical parameters (molar absorption coefficient, fluorescence quantum yield) and citations to the originating scientific literature. The spectral databases have chiefly been assembled by digitizing spectra from the vast print literature. The conversion of print spectra to digital form presents several technical challenges: (1) print spectra are plagued by line crossing from overlaid spectra, use of discontinuous lines, and interference from grids, tick marks, and the graph baseline; (2) the print spectrum in some cases lacks wavelength markers or is annotated with markers at odds with values in the accompanying text; and (3) the digitized spectra often are composed of data with uneven wavelength (x-axis) intervals. Here, manually assisted digitization – wherein the user steps through a print spectrum with hand-eye assistance to create the corresponding digital dataset – is compared with automated digitization. Graphical features that bear on use of each method are outlined. Two spreadsheet-based tools have been developed for application following digitization: (i) conversion of xy-coordinate data from uneven to uniform x-axis intervals, and (ii) calibration of the digitized spectrum with appropriate wavelength values. The two tools enable more accurate rendition of print spectra into digital form, as required for qualitative comparisons and quantitative calculations, and have been added to the PhotochemCAD website (http://www.photochemcad.com).
© (2023) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.
Masahiko Taniguchi, Zhiyuan Wu, Caitlin D. Sterling, and Jonathan S. Lindsey "Digitization of print-based absorption and fluorescence spectra – extracting clarity from clutter", Proc. SPIE 12398, Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications XIV, 1239806 (17 March 2023); https://doi.org/10.1117/12.2651694
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KEYWORDS
Printing

Fluorescence

Calibration

Absorption

Absorption spectrum

Data conversion

Databases

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